The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1305
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1413744
End posion on genome 1413873
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
acgcggggac
tRNA gene sequence 
GCCCCGGCGGTGTAGCTCGGTCAATCATGCGGGACTTTCGATCCCGCGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
aaccgacaat
Secondary structure (Cloverleaf model)
>At1305	Glu	TTC
                   c      ACCA aaccgacaat
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
    T C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    T C A A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGCGGTGTAGCTCGGTCAagggcccgcgggtgaccgcgggcccgccgatATCATG
CGGGACTTTCGaggcccgtccgggccggagacATCCCGCGACCCGGGTTCAAATCCCGGC
CGGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK