The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1307
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1560286
End posion on genome 1560363
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
gggtgcggga
tRNA gene sequence 
CCGGCCGCAGCTCAGTCTGGCTAGAGCGCGGGACTGTAGATCCCGTGGTCCCGGGTTCAA
ATCCCGGCGGCCGGACCA
Downstream region at tRNA end position 
agctgaaaat
Secondary structure (Cloverleaf model)
>At1307	Tyr	GTA
                   a      ACCA agctgaaaat
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
    C T G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    C T A          G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCGGCCGCAGCTCAGTCTGGCTAGAGCGCGGGACTGTAGATCCCGTGGTCCCGGGTTCAA
ATCCCGGCGGCCGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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