The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1308
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1640532
End posion on genome 1640609
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gctttgggtc
tRNA gene sequence 
GGGGCCGTGGGGTAGCCTGGTCTATCCTTCCGGCTTTGGGGGCCGGAGACCCCGGTTCAA
ATCCGGGCGGCCCCACCA
Downstream region at tRNA end position 
attctgagaa
Secondary structure (Cloverleaf model)
>At1308	Pro	TGG
                   c      ACCA attctgagaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G G C C     A
    C C G A        G      | | | | |     A
  T         T G G G       C C C G G     C
  G           | | +                 T T
  G         T C C T
    T C T A        T     AGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  T       G
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCCTGGTCTATCCTTCCGGCTTTGGGGGCCGGAGACCCCGGTTCAA
ATCCGGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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