The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1309
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1659600
End posion on genome 1659729
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gtacggagac
tRNA gene sequence 
GCCCCGGCGGTGTAGCCCGGTCAATCATGCGGGACTTTCGATCCCGCGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
aaccgacaat
Secondary structure (Cloverleaf model)
>At1309	Glu	TTC
                   c      ACCA aaccgacaat
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    T C A A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGCGGTGTAGCCCGGTCAagggcccgcgggtgaccgcgggcccgccgatATCATG
CGGGACTTTCGaggcccgtccgggccggagacATCCCGCGACCCGGGTTCAAATCCCGGC
CGGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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