The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1311
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 37227
End posion on genome 37152
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
cgacggtgga
tRNA gene sequence 
GCGGCCGCAGTCTAGTCTGGTAGGACGCGGGCCTTCCGAGCCCGTGGCCCGGGTTCAAAT
CCCGGCGGCCGCACCA
Downstream region at tRNA end position 
agcctcaaat
Secondary structure (Cloverleaf model)
>At1311	Gly	TCC
                   a      ACCA agcctcaaat
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
      T G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | |                 T T
    G       G G A C
      G T A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGCAGTCTAGTCTGGTAGGACGCGGGCCTTCCGAGCCCGTGGCCCGGGTTCAAAT
CCCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK