The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1313
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 272692
End posion on genome 272615
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gaacgggcgc
tRNA gene sequence 
GCCGCGGCAGCTTAGCCTGGTTAGAGCGCGGGACTTGTAATCCCGTGGTCCCGGGTTCAA
ATCCCGGCCGCGGCTCCA
Downstream region at tRNA end position 
acccgaatcg
Secondary structure (Cloverleaf model)
>At1313	Thr	TGT
                   c      TCCA acccgaatcg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        A      | | | | |     A
  T         T T C G       C C G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGCAGCTTAGCCTGGTTAGAGCGCGGGACTTGTAATCCCGTGGTCCCGGGTTCAA
ATCCCGGCCGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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