The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1314
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 299603
End posion on genome 299530
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
tggcggggac
tRNA gene sequence 
GGGCCCGCAGTTCAGCCCGGCAGAACGCCGGCCTGACGAGCCGGTGGTCCCGGGTTCAAA
TCCCGGCGGGCCCActt
Downstream region at tRNA end position 
tgaaattgtt
Secondary structure (Cloverleaf model)
>At1314	Val	GAC
                   c      Actt tgaaattgtt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
      C G A        A      | | | | |     A
    C       C T T G       C C G G G     C
    C       | | | |                 T T
    G       G A A C
      G C A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGCAGTTCAGCCCGGCAGAACGCCGGCCTGACGAGCCGGTGGTCCCGGGTTCAAA
TCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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