The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1316
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 512322
End posion on genome 512249
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ctagggagca
tRNA gene sequence 
GGCCCCGCAGTCTAGCCTGGATAGGACGCGGGCCTGCGGAGCCCGTAGCCCGGGTTCAAA
TCCCGGCGGGGCCAcat
Downstream region at tRNA end position 
gacctatcgt
Secondary structure (Cloverleaf model)
>At1316	Arg	GCG
                   a      Acat gacctatcgt
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T A          G     TAGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCCCCGCAGTCTAGCCTGGATAGGACGCGGGCCTGCGGAGCCCGTAGCCCGGGTTCAAA
TCCCGGCGGGGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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