The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1317
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 657703
End posion on genome 657626
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
agggatgaga
tRNA gene sequence 
GCCCCGGCGGTGTAGCCCGGTCTATCATCCGGGCCTGTCGAGCCCGGGACCCGGGTTCAA
ATCCCGGCCGGGGCGCCA
Downstream region at tRNA end position 
aaatcgtaaa
Secondary structure (Cloverleaf model)
>At1317	Asp	GTC
                   a      GCCA aaatcgtaaa
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    T C T A        C     GGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGCGGTGTAGCCCGGTCTATCATCCGGGCCTGTCGAGCCCGGGACCCGGGTTCAA
ATCCCGGCCGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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