The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1318
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 674645
End posion on genome 674556
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position
ctcgaccggc
tRNA gene sequence
GCGGGGGCGCCCGAGCCTGGTCAAAGGGGCGGGACTTAGGATCCCGTGGCCGTAGGGCCG
TCCCGGGTTCAAATCCCGGCCCCCGCACCA
Downstream region at tRNA end position
ccggagatcg
Secondary structure (Cloverleaf model)
>At1318	Leu	TAG
                   c      ACCA ccggagatcg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCCGTAGGGCCGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGCGCCCGAGCCTGGTCAAAGGGGCGGGACTTAGGATCCCGTGGCCGTAGGGCCG
TCCCGGGTTCAAATCCCGGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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