The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1319
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 864537
End posion on genome 864460
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gttcgggagc
tRNA gene sequence 
GCCGCGGCAGCTCAGCCTGGTTAGAGCGCCGGCCTGTGGAGCCGGTGGCCCCGGGTTCAA
ATCCCGGCCGCGGCCCCA
Downstream region at tRNA end position 
tccgagatcg
Secondary structure (Cloverleaf model)
>At1319	His	GTG
                   c      CCCA tccgagatcg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGCAGCTCAGCCTGGTTAGAGCGCCGGCCTGTGGAGCCGGTGGCCCCGGGTTCAA
ATCCCGGCCGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK