The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1320
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 881801
End posion on genome 881699
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cgggattgag
tRNA gene sequence 
GCCGCGGCAGCTCAGTAGGTAGAGCGCGGGACTGTTAATCCCGTGGTCCCCGGTTCAAGT
CCGGGCCGCGGCGCCA
Downstream region at tRNA end position 
aatcccaaat
Secondary structure (Cloverleaf model)
>At1320	Asn	GTT
                   g      GCCA aatcccaaat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    C     G G G C C     A
      T G A        A      | | | | |     A
    A       C T C G       C C C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGCAGCTCAGTAGGTAGAGCGCGGGACTGTTAaggcccgatgaagagagggccgc
agatATCCCGTGGTCCCCGGTTCAAGTCCGGGCCGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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