The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1321
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1062375
End posion on genome 1062279
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ccgggcgatc
tRNA gene sequence 
GCCGCGGCAGCCTAGCCTGGCTGGGCGCGGGACTGCAGATCCCGTTACCCGGGTTCAAAT
CCCGGCCGCGGCTCCA
Downstream region at tRNA end position 
acccagaatc
Secondary structure (Cloverleaf model)
>At1321	Cys	GCA
                   c      TCCA acccagaatc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C C G G G     C
    T       + | | |                 T T
    G       G G G C
      G C T        G     TTAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGCAGCCTAGCCTGGCTGGGCGCGGGACTGCAGccgggcacggtcccggcggatA
TCCCGTTACCCGGGTTCAAATCCCGGCCGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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