The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1322
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1552920
End posion on genome 1552830
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gtctggatgc
tRNA gene sequence 
GCCGGGGCGGCCGAGCCCGGTCCAAGGCGCGGGATTGGAGATCCCGTGGCCCGTATGGGC
CGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
aacccagaat
Secondary structure (Cloverleaf model)
>At1322	Ser	GGA
                   c      GCCA aacccagaat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  C         G C C G       C C G G G     C
  G           | | |                 T T
  G         A G G C
    T C C A        G     TGGCCCGTATGGGCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGCGGCCGAGCCCGGTCCAAGGCGCGGGATTGGAGATCCCGTGGCCCGTATGGGC
CGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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