The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1323
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1634571
End posion on genome 1634496
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
ggcggagcga
tRNA gene sequence 
GCGGCCGCAGTCTAGTCTGGTAGGACGCGGGCCTGCCGAGCCCGTGGCCCGGGTTCAAAT
CCCGGCGGCCGCACCA
Downstream region at tRNA end position 
aacctcaaat
Secondary structure (Cloverleaf model)
>At1323	Gly	GCC
                   a      ACCA aacctcaaat
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
      T G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | |                 T T
    G       G G A C
      G T A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGCAGTCTAGTCTGGTAGGACGCGGGCCTGCCGAGCCCGTGGCCCGGGTTCAAAT
CCCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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