The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1324
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1639188
End posion on genome 1639080
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tgacgccgaa
tRNA gene sequence 
GCCGCGGCAGCTCAGCCTGGGAGAGCGCCGGACTGAAGATCCGGTGGGCCCGGGTTCAAA
TCCCGGCCGCGGCACCA
Downstream region at tRNA end position 
agcccagaat
Secondary structure (Cloverleaf model)
>At1324	Phe	GAA
                   a      ACCA agcccagaat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     TGGGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGCAGCTCAGCCTGGGAGAGCGCCGGACTGAAGagatcccgcgggtattccgcgg
gatcgccgccATCCGGTGGGCCCGGGTTCAAATCCCGGCCGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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