The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1326
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1246
End posion on genome 1319
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tctgcattga
tRNA gene sequence 
GGGCCCGTGGTCTAGGTGGTTATGACATCGCCTTCACACGGCGGGGATCACGCGTTCGAA
TCGCGTCGGGCCCActg
Downstream region at tRNA end position 
cccacaaagc
Secondary structure (Cloverleaf model)
>At1326	Val	CAC
                   a      Actg cccacaaagc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T G C G C     A
      G G A        G      | | | | |     G
    T       T C T G       A C G C G     C
    G         | | |                 T T
    G       T G A C
      T T A        A     GGATC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGGTGGTTATGACATCGCCTTCACACGGCGGGGATCACGCGTTCGAA
TCGCGTCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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