The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1330
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 111084
End posion on genome 111168
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
acatcgtgat
tRNA gene sequence 
GCGGGGGTTGCCAAGTCAGGTCAAAGGCGCTGGATTCAGGGTCCAGTCTCGCAGGAGTTC
GTGGGTTCGAATCCCATCCCCCGCActc
Downstream region at tRNA end position 
ttttgagaga
Secondary structure (Cloverleaf model)
>At1330	Leu	CAG
                   t      Actc ttttgagaga
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T A C C C     A
    C T G A        T      + | | | |     G
  A         A C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGCAGGAGTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCAAGTCAGGTCAAAGGCGCTGGATTCAGGGTCCAGTCTCGCAGGAGTTC
GTGGGTTCGAATCCCATCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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