The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1331
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 339791
End posion on genome 339875
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ataatcctgt
tRNA gene sequence 
GTCGAGGTAGCCTAGCCAGGTAGGGCGCAGGTTTGCTAAACCTGTTCCCCTTCGGGGATC
GAGGGTTCGAATCCCTCCCTCGGCGctc
Downstream region at tRNA end position 
aattttacgg
Secondary structure (Cloverleaf model)
>At1331	Ser	GCT
                   t      Gctc aattttacgg
                     G - C
                     T + G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | | | | |     G
    C       T C C G       G A G G G     C
    A       + | | |                 T T
    G       G G G C
      G T A        G     TTCCCCTTCGGGGATC
                    C - G
                    A - T
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGAGGTAGCCTAGCCAGGTAGGGCGCAGGTTTGCTAAACCTGTTCCCCTTCGGGGATC
GAGGGTTCGAATCCCTCCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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