The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1333
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 597361
End posion on genome 597434
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cccgatgttc
tRNA gene sequence 
GCCTCGGTAGCTCAGCTGGTCAGAGCGAGTGACTTGTAATCACTAGGTCGCGTGTTCGAA
TCACGCCCGGGGCTtct
Downstream region at tRNA end position 
ctgtgggggt
Secondary structure (Cloverleaf model)
>At1333	Thr	TGT
                   c      Ttct ctgtgggggt
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C A C     A
      C G A        A      | | | | |     G
    T       C T C G       G C G T G     C
    G       | | | |                 T T
    G       G A G C
      T C A        G     AGGTC
                    A - T
                    G - C
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTAGCTCAGCTGGTCAGAGCGAGTGACTTGTAATCACTAGGTCGCGTGTTCGAA
TCACGCCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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