The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1334
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 610315
End posion on genome 610400
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ctcactcgtt
tRNA gene sequence 
GTCCCGATGGGGTAGCGGATATCCCGGAGGCCTGCGGAGCCTTCAACCCGGGTTCGAATC
CCGGTCGGGACGttt
Downstream region at tRNA end position 
gaattttggt
Secondary structure (Cloverleaf model)
>At1334	Arg	GCG
                   t      Gttt gaattttggt
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | |                 T T
    A       T C C C
      T A          G     CAAC
                    G + T
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCCGATGGGGTAGCGGATATCCCGGAGGCCTGCGGagatcgtcgcagacAGCCTTCAA
CCCGGGTTCGAATCCCGGTCGGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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