The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1335
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 705107
End posion on genome 705181
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ttaagctaga
tRNA gene sequence 
GCTCCGGTAGTGTAGCCAGGTCAATCATTCCGGCCTTTCGAGCCGAAGACTCGGGTTCAA
ATCCCGACCGGAGCAtga
Downstream region at tRNA end position 
tccgcaccca
Secondary structure (Cloverleaf model)
>At1335	Glu	TTC
                   a      Atga tccgcaccca
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A G C C C     A
    C C G A        A      | | | | |     A
  A         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    T C A A        T     AGAC
                    C   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTAGTGTAGCCAGGTCAATCATTCCGGCCTTTCGAGCCGAAGACTCGGGTTCAA
ATCCCGACCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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