The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1336
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 799846
End posion on genome 799919
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ttaccgacgc
tRNA gene sequence 
GGGCCGATAGCTTAGTCAGGTAGAGCGAAAGGCTCTTAACCTTTAGGTCGGGGGTTCAAA
TCCCTCTCGGCCCGctt
Downstream region at tRNA end position 
aaggggctgt
Secondary structure (Cloverleaf model)
>At1336	Lys	CTT
                   c      Gctt aaggggctgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        A      | + | | |     A
    C       T T C G       G G G G G     C
    A       + | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    A - T
                    A - T
                    G - C
                    G - C
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGATAGCTTAGTCAGGTAGAGCGAAAGGCTCTTAACCTTTAGGTCGGGGGTTCAAA
TCCCTCTCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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