The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1337
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 799925
End posion on genome 800106
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gcccgcttaa
tRNA gene sequence 
GGGGCTGTGGCCTAGCCAGGTAGGGCGACGGGCTCCAGACCCGTCGATCGTGCGTTCGAA
TCGCACCAGCCCCAcct
Downstream region at tRNA end position 
ttctgacggc
Secondary structure (Cloverleaf model)
>At1337	Trp	CCA
                   a      Acct ttctgacggc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C A C G C     A
      C G A        G      | | | | |     G
    C       T C C G       G T G C G     C
    A       + | | |                 T T
    G       G G G C
      G T A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCTGTGGCCTAGCCAGGTAGGGCGACGGGCTCCAGcggtatgactggatgatgagca
acgggtctgctgagccatcccgacggggatggtgttgatgatccgttggagcactgagat
gatcatgtgttctcagaatcggagagACCCGTCGATCGTGCGTTCGAATCGCACCAGCCC
CA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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