The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1340
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 850199
End posion on genome 850283
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tacacaacgc
tRNA gene sequence 
GCCAAGGTGGCGGAGAGGCTACGCAAATGCCTGCAGAGCATTACCACTCCGGTTCGAATC
CGGACCTTGGCTtca
Downstream region at tRNA end position 
aatcagagag
Secondary structure (Cloverleaf model)
>At1340	Cys	GCA
                   c      Ttca aatcagagag
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A G G C C     A
        G A        G      | | | | |     G
      A     G G C G       T C C G G     C
      G       | | |                 T T
      G     A C G C
        C T        A     ACCAC
                    A - T
                    A - T
                    T - A
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCGGAGAGGCTACGCAAATGCCTGCAGaaccatagcggatAGCATTACCAC
TCCGGTTCGAATCCGGACCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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