The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1343
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1076995
End posion on genome 1077098
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
aatgtgatgg
tRNA gene sequence 
GCTGAGGTAGCCAAGTGGCCTACGGCGCTGGTCTTGAGAACCAGTGGTGCATCGCACCGC
GTGAGTTCGAATCTCACCCTCAGCGtat
Downstream region at tRNA end position 
acaaatttct
Secondary structure (Cloverleaf model)
>At1343	Ser	TGA
                   g      Gtat acaaatttct
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
      T G A        A      | | | | |     G
    G       A C C G       G T G A G     C
    G         | | |                 T T
    C       C G G C
      C T A        G     TGGTGCATCGCACCGC
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G *
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGCCAAGTGGCCTACGGCGCTGGTCTTGAGgttccgtaaggaacaggctAAC
CAGTGGTGCATCGCACCGCGTGAGTTCGAATCTCACCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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