The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1346
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1300960
End posion on genome 1301032
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
cgagcccatt
tRNA gene sequence 
GCCCAAGTAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAATGTCCCCGGTTCGAGT
CCGGGCTTGGGCAtcg
Downstream region at tRNA end position 
cgcacatgat
Secondary structure (Cloverleaf model)
>At1346	Phe	GAA
                   t      Atcg cgcacatgat
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C          T G
                    T     G G G C C     A
      T G A        A      | | | | |     G
    T       C T C G       C C C G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     ATGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCAAGTAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAATGTCCCCGGTTCGAGT
CCGGGCTTGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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