The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1348
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1392025
End posion on genome 1392099
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
agcggttagc
tRNA gene sequence 
GCCTCGGTAGCAAAGCTCGGTCATTGCGCGTCCTTGGTAAGGACGAGGCCGCGGGTTCGA
ATCCCGCCCGAGGCTctg
Downstream region at tRNA end position 
gcagtgctca
Secondary structure (Cloverleaf model)
>At1348	Thr	GGT
                   c      Tctg gcagtgctca
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        A      | | | | |     G
  C         A A C G       G C G G G     C
  G         | | | |                 T T
  G         T T G C
    T C A          G     AGGCC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTAGCAAAGCTCGGTCATTGCGCGTCCTTGGTAAGGACGAGGCCGCGGGTTCGA
ATCCCGCCCGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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