The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1350
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1508808
End posion on genome 1508891
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
aaatgagcgg
tRNA gene sequence 
GCCGCCATAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAATGTCACAGGTTCGAGC
CCTGTTGGCGGCGcta
Downstream region at tRNA end position 
ttgccacttt
Secondary structure (Cloverleaf model)
>At1350	Asn	GTT
                   g      Gcta ttgccacttt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T          C G
                    T     T G T C C     A
      T G A        A      | | | | |     G
    T       C T C A       A C A G G     C
    G       | | | |                 T T
    G       G A G T
      T A          G     ATGTC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCATAACTCAGTTGGTAGAGTGTCTGGCTGTTAatccggcagatACCAGAATGTCA
CAGGTTCGAGCCCTGTTGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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