The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1351
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1583822
End posion on genome 1583896
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gcccttttgc
tRNA gene sequence 
GGGACAGTAGGGTAGCCTGGTCCATCCTCGAGCGTTTGGGACGCTTGGACCGCGGTTCGA
ATCCGCGCTGTCCCAtca
Downstream region at tRNA end position 
cctggactca
Secondary structure (Cloverleaf model)
>At1351	Pro	TGG
                   c      Atca cctggactca
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     A - T
                     G - C          T A
                    T     G C G C C     A
    C C G A        A      | | | | |     G
  T         T G G G       C G C G G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     GGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACAGTAGGGTAGCCTGGTCCATCCTCGAGCGTTTGGGACGCTTGGACCGCGGTTCGA
ATCCGCGCTGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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