The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1352
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1764345
End posion on genome 1764429
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ccagaagcat
tRNA gene sequence 
GCGGGGGTTGCCAAGCATGGTCAAAGGCGCAGGATTGAGGGTCCTGTCACGTAGGTGTTC
GCGGGTTCGAATCCCGTCCCCCGCActc
Downstream region at tRNA end position 
ttttagccgt
Secondary structure (Cloverleaf model)
>At1352	Leu	GAG
                   t      Actc ttttagccgt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
    A C G A        T      + | | | |     G
  T         A C C G       G C G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCACGTAGGTGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCAAGCATGGTCAAAGGCGCAGGATTGAGGGTCCTGTCACGTAGGTGTTC
GCGGGTTCGAATCCCGTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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