The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1353
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 40771
End posion on genome 40700
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
acttaatcgt
tRNA gene sequence 
GCGGCTGTGGTCCAGGGGTTATGACATGAGCTTCCCAAGCTCGTAACCCGGGTTCGAATC
CCGGCAGCCGCAttt
Downstream region at tRNA end position 
gttttgctgc
Secondary structure (Cloverleaf model)
>At1353	Gly	CCC
                   t      Attt gttttgctgc
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     G G C C C     A
      G G A        G      | | | | |     G
    G       C C T G       C C G G G     C
    G         | | |                 T T
    T       T G A C
      T A          A     TAAC
                    T + G
                    G - C
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCTGTGGTCCAGGGGTTATGACATGAGCTTCCCAAGCTCGTAACCCGGGTTCGAATC
CCGGCAGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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