The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1354
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 143220
End posion on genome 143133
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gtgatcacgc
tRNA gene sequence 
GGGCTCGTGGGGTAGAGGATATCCTAGCGGGCTTCGGACCCGCTGACCTGGGTTCGATTC
CCAGCGAGTCCGttt
Downstream region at tRNA end position 
tgcgacatgc
Secondary structure (Cloverleaf model)
>At1354	Arg	TCG
                   c      Gttt tgcgacatgc
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     C - G
                     G - C          T T
                    T     G A C C C     A
      A G A        G      | | | | |     G
    G       T G G G       C T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          A     TGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGGGTAGAGGATATCCTAGCGGGCTTCGGagatctcatcgaggagACCCGCT
GACCTGGGTTCGATTCCCAGCGAGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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