The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1356
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 495551
End posion on genome 495477
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
agagagaaag
tRNA gene sequence 
GGGGTTGTAGGGTAGCCTGGTCCATCCTACAGCGTTCGGGACGCTGTGACCTGAGTTCGA
ATCTCAGCAACCCCAtca
Downstream region at tRNA end position 
tactcttcct
Secondary structure (Cloverleaf model)
>At1356	Pro	CGG
                   g      Atca tactcttcct
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C          T A
                    T     G A C T C     A
    C C G A        A      | | | | |     G
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        A     TGAC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTTGTAGGGTAGCCTGGTCCATCCTACAGCGTTCGGGACGCTGTGACCTGAGTTCGA
ATCTCAGCAACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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