The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1359
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 551859
End posion on genome 551752
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
aatagcgagg
tRNA gene sequence 
CCCGCCTTAACTCAGCCTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAA
TCTGGGAGGCGGGActt
Downstream region at tRNA end position 
gagaattgtc
Secondary structure (Cloverleaf model)
>At1359	Tyr	GTA
                   g      Actt gagaattgtc
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G T C     A
      C G A        A      | | | + |     G
    C       C T C A       C C C G G     C
    T       | | | |                 T T
    G       G A G T
      G T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGCCTGGTAGAGTGCGCGGCTGTAGtatgtatcgcacctttatggtg
ctacgcgcagtcACCGCGATGTCCCCGGTTCGAATCTGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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