The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1363
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 915515
End posion on genome 915442
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ccacgttcgc
tRNA gene sequence 
GGGCTCGTAGCTTAGCCTGGCGGAGCGCACGGCTGATAACCGTGAGGTCACGCGTTCGAA
TCGCGTCGGGCCCAtat
Downstream region at tRNA end position 
ttttttatct
Secondary structure (Cloverleaf model)
>At1363	Ile	GAT
                   c      Atat ttttttatct
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     T G C G C     A
      C G A        A      | | | | |     G
    C       T T C G       A C G C G     C
    T       + | | |                 T T
    G       G A G C
      G C G        G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGCTTAGCCTGGCGGAGCGCACGGCTGATAACCGTGAGGTCACGCGTTCGAA
TCGCGTCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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