The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1366
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1321122
End posion on genome 1321038
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ggatacacag
tRNA gene sequence 
GCGGGGGTAACCAAGCCAGGCCAACGGTGATAGACTCAAGATCTATTCTCGCAGGAGTTC
AAGGGTTCAAATCCCTTCCCCCGCAttc
Downstream region at tRNA end position 
tttgacattt
Secondary structure (Cloverleaf model)
>At1366	Leu	CAA
                   g      Attc tttgacattt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        A      | | | | |     A
  A         A C C A       A A G G G     C
  G           | | |                 T T
  G         C G G T
    C C A A        G     TCTCGCAGGAGTTC
                    A - T
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTAACCAAGCCAGGCCAACGGTGATAGACTCAAGATCTATTCTCGCAGGAGTTC
AAGGGTTCAAATCCCTTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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