The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1367
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1425366
End posion on genome 1425272
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
accatcctgt
tRNA gene sequence 
GCCGCCGTGGCTTAGCCCGGTTAGAGCGGCTGATTCGTAATCAGCAGTTCATGGGTTCGA
ATCCCATCGGCGGCTtta
Downstream region at tRNA end position 
ctaaacagac
Secondary structure (Cloverleaf model)
>At1367	Thr	CGT
                   t      Ttta ctaaacagac
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
    C C G A        G      | | | | |     G
  C         T T C G       A T G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGTTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGGCTTAGCCCGGTTAGAGCGGCTGATTCGTAtgagcctcaggctccgggatA
TCAGCAGTTCATGGGTTCGAATCCCATCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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