The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1371
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1617131
End posion on genome 1617059
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tgggatctat
tRNA gene sequence 
GGGCTTGTAGCTCAGCAGGTAGAGCGCCGCCTTTGCGAGGCGGAGGCCCTGGGTCCGAAT
CCCAGCAAGTCCAttg
Downstream region at tRNA end position 
ggtgcacctg
Secondary structure (Cloverleaf model)
>At1371	Ala	TGC
                   t      Attg ggtgcacctg
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     G A C C C     A
      C G A        A      | | | | |     G
    A       C T C G       C T G G G     C
    G       | | | |                 T C
    G       G A G C
      T A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       G
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTAGCTCAGCAGGTAGAGCGCCGCCTTTGCGAGGCGGAGGCCCTGGGTCCGAAT
CCCAGCAAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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