The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1372
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1858572
End posion on genome 1858475
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
gaagcacagt
tRNA gene sequence
GCCGAGGTCGTCTAGTGGTAGGGCGCCAGCCTGGAGAGCTGGTGACTCGAAAGAGTCTCG
TGAGTTCGAATCTCACCCTCGGCGctt
Downstream region at tRNA end position
ttatacaaca
Secondary structure (Cloverleaf model)
>At1372	Ser	GGA
                   t      Gctt ttatacaaca
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
        G A        C      | | | | |     G
      T     T C T G       G T G A G     C
      G     + | + |                 T T
      G     G G G C
        T A        G     TGACTCGAAAGAGTCTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G *
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTCGTCTAGTGGTAGGGCGCCAGCCTGGAGtgagcctcctggagAGCTGGTGAC
TCGAAAGAGTCTCGTGAGTTCGAATCTCACCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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