The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1373
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 702737
End posion on genome 702811
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gtaccagtaa
tRNA gene sequence 
GGGACCGTAGGGTAGCTTGGTCCATCCTTCGGCGTTCGGGACGCCGTAACCTGAGTTCGA
ATCTCAGCGGTCCCAttt
Downstream region at tRNA end position 
ccctttttaa
Secondary structure (Cloverleaf model)
>At1373	Pro	CGG
                   a      Attt ccctttttaa
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G A C T C     A
    T C G A        A      | | | | |     G
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        T     TAAC
                    C - G
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTAGGGTAGCTTGGTCCATCCTTCGGCGTTCGGGACGCCGTAACCTGAGTTCGA
ATCTCAGCGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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