The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1374
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 719510
End posion on genome 719581
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
aaacatacgt
tRNA gene sequence 
GCCGTCGTGGCTTAGTGGTATAGCGGCTGATTCGTAATCAGCAGGCCGAGGGTTCGAGTC
CCTCCGGCGGCTctg
Downstream region at tRNA end position 
tatctttttt
Secondary structure (Cloverleaf model)
>At1374	Thr	CGT
                   t      Tctg tatctttttt
                     G - C
                     C - G
                     C - G
                     G - C
                     T + G
                     C - G
                     G - C          T G
                    T     C T C C C     A
        G A        G      | | | | |     G
      T     T T C G       G A G G G     C
      G       | | |                 T T
      G     T A G C
        T A        G     AGGCC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTGGCTTAGTGGTATAGCGGCTGATTCGTAATCAGCAGGCCGAGGGTTCGAGTC
CCTCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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