The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1375
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 849942
End posion on genome 850013
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
aagacagttt
tRNA gene sequence 
GCGACTGTGGTTTAGTGGCTATGACCTGAGCTTCCCAAGCTTAGAACCCGGGTTCGAATC
CCGGCAGTCGCAttt
Downstream region at tRNA end position 
ctgtgaaggg
Secondary structure (Cloverleaf model)
>At1375	Gly	CCC
                   t      Attt ctgtgaaggg
                     G - C
                     C - G
                     G - C
                     A - T
                     C - G
                     T - A
                     G - C          T A
                    T     G G C C C     A
      T G A        G      | | | | |     G
    G       T T T G       C C G G G     C
    G         + | |                 T T
    C       T G A C
      T A          C     GAAC
                    T - A
                    G + T
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGACTGTGGTTTAGTGGCTATGACCTGAGCTTCCCAAGCTTAGAACCCGGGTTCGAATC
CCGGCAGTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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