The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1377
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 1308692
End posion on genome 1308774
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
taagctctgt
tRNA gene sequence 
GCCGAGGTAGTCTAGCGGTAGGGCGCAAGCCTGGAAAGCTTGTGGGGCTTAGCCCCTCGG
GAGTTCAAATCTCCCCCTCGGCGtca
Downstream region at tRNA end position 
tgttttcaag
Secondary structure (Cloverleaf model)
>At1377	Ser	GGA
                   t      Gtca tgttttcaag
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
        G A        A      | | | | |     A
      C     T C T G       G G G A G     C
      G     + | + |                 T T
      G     G G G C
        T A        G     TGGGGCTTAGCCCCTC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTAGTCTAGCGGTAGGGCGCAAGCCTGGAAAGCTTGTGGGGCTTAGCCCCTCGG
GAGTTCAAATCTCCCCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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