The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1381
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 1682346
End posion on genome 1682423
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gatgcgatgt
tRNA gene sequence 
GCTCCGGTAGTGTAGTCCGGCCAATCATTCCGGCCTTTCGAGCCGAAGACTCGGGTTCGA
ATCCCGGCCGGAGCACCA
Downstream region at tRNA end position 
aatttttttt
Secondary structure (Cloverleaf model)
>At1381	Glu	TTC
                   t      ACCA aatttttttt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      + | | | |     G
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        T     AGAC
                    C   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTAGTGTAGTCCGGCCAATCATTCCGGCCTTTCGAGCCGAAGACTCGGGTTCGA
ATCCCGGCCGGAGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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