The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1382
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 1930138
End posion on genome 1930210
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cgtctctctc
tRNA gene sequence 
GGGCTTGTAGATCAGCTGGAAGATCGCTGCCTTTGCAAGGCAGAGGCCCTGGGTTCGAGT
CCCAGCAAGTCCAttt
Downstream region at tRNA end position 
ttgtgcaccc
Secondary structure (Cloverleaf model)
>At1382	Ala	TGC
                   c      Attt ttgtgcaccc
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     T - A
                     G - C          T G
                    T     G A C C C     A
      C G A        A      | | | | |     G
    T       C T A G       C T G G G     C
    G       | | | |                 T T
    G       G A T C
      A A          G     AGGCC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTAGATCAGCTGGAAGATCGCTGCCTTTGCAAGGCAGAGGCCCTGGGTTCGAGT
CCCAGCAAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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