The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1393
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 4085009
End posion on genome 4085093
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
gctacatagt
tRNA gene sequence 
GCGAGAGTTGCCCAGCCAGGTCAAAGGCGCCAGGTTCAGAGCCTGGTCTTGTAGGAGTTC
GTGCGTTCGAATCGCACCTCTCGCActc
Downstream region at tRNA end position 
tttctttttt
Secondary structure (Cloverleaf model)
>At1393	Leu	CAG
                   t      Actc tttctttttt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C          T A
                    T     C A C G C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G C G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTTGTAGGAGTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       G
                  T       A
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGAGTTGCCCAGCCAGGTCAAAGGCGCCAGGTTCAGAGCCTGGTCTTGTAGGAGTTC
GTGCGTTCGAATCGCACCTCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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