The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1395
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 4781698
End posion on genome 4781770
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
gagcacatga
tRNA gene sequence 
GCCGCTTTAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAATGTCGTAGGTTCGAGC
CCTGCAAGCGGCGtaa
Downstream region at tRNA end position 
aacttttgca
Secondary structure (Cloverleaf model)
>At1395	Asn	GTT
                   a      Gtaa aacttttgca
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     T - A          C G
                    T     C G T C C     A
      T G A        A      | + | | |     G
    T       C T C A       G T A G G     C
    G       | | | |                 T T
    G       G A G T
      T A          G     ATGTC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCTTTAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAATGTCGTAGGTTCGAGC
CCTGCAAGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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