The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1398
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 4875260
End posion on genome 4875344
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agtttgaaat
tRNA gene sequence 
GACGAGATAGCCAAGCCCGGTATGGCGTGGGATTGCTAATCCCATGATGCCCTGCATCGC
GGGGGTTCGAGTCCCCCTCTCGTCGctt
Downstream region at tRNA end position 
ctttttttga
Secondary structure (Cloverleaf model)
>At1398	Ser	GCT
                   t      Gctt ctttttttga
                     G - C
                     A - T
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T G
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       A C C G       G G G G G     C
    C       | | | |                 T T
    G       T G G C
      G T A        G     TGATGCCCTGCATCGC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GACGAGATAGCCAAGCCCGGTATGGCGTGGGATTGCTAATCCCATGATGCCCTGCATCGC
GGGGGTTCGAGTCCCCCTCTCGTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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