The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1405
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 259992
End posion on genome 259880
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
gtatcattgt
tRNA gene sequence 
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAGTC
TGGGAGGCGGGAcct
Downstream region at tRNA end position 
gaaacattca
Secondary structure (Cloverleaf model)
>At1405	Tyr	GTA
                   t      Acct gaaacattca
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T G
                    T     G G G T C     A
        G A        A      | | | + |     G
      T     C T C A       C C C G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGttcggctcgtgcgggttcctcccg
tacatctctgcgcaggcACCGCGATGTCCCCGGTTCGAGTCTGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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